Evaluating the characteristics of carbonate reservoirs, given their significant heterogeneity, is always accompanied by challenges and high uncertainties. Water saturation is a crucial parameter in assessing these reservoirs, and the Archie equation is commonly used for water saturation estimation. Moreover, the effect of water saturation on the mechanical behavior of rock is recognized as an important phenomenon in geotechnical engineering. The accuracy of water saturation calculated through the Archie equation depends on the precision of its parameters, including cementation exponent, saturation exponent, and tortuosity exponent. The heterogeneity of carbonate reservoirs significantly affects the Archie equation coefficients and, consequently, water saturation calculations. In this study, various methods, including the electrical efficiency, current zone indicator, and Winland method, were employed to manage reservoir heterogeneity. Subsequently, Archie parameters were calculated for each category, and water saturation was determined and compared with Dean-Stark water saturation. Furthermore, the influential parameters on the accuracy of water saturation were discussed and examined. To achieve the study objectives, 157 Dean-Stark water saturation data, 57 core plug samples for formation resistivity factor (FRF) determination, 20 core plug samples for measuring formation resistivity index (FRI), 1114 porosity and permeability measurements from core plug samples and 1368 thin sections were utilized from an exploration well in the western Gulf of Persian. Our findings highlight the significance of exploring electrical behavior characteristics and pore throat radii as crucial elements influencing the precision of water saturation calculations. As per the results, employing constant Archie parameters leads to an overestimation of water saturation and, consequently, an underestimation of hydrocarbon reserves. Our analysis illustrates that effectively managing reservoir heterogeneity through the electrical efficiency method significantly improves the accuracy of predicted water saturation compared to other approaches. Conversely, the Winland method exhibits the highest uncertainty in predicting water saturation.